Publications

  1. Le Thomas A, Stuwe E, Li S, Du J, Marinov G, Rozhkov N, Chen YC, Luo Y, Sachidanandam R, Fejes Tóth, K., Patel D, Aravin (2014) Transgenerationally inherited piRNAs trigger piRNA biogenesis by changing the chromatin of piRNA clusters and inducing precursor processing. Genes Dev. 28(15):1667-80. PMID: 25085419
  2. Le Thomas A, Fejes Tóth, K., Aravin AA. (2014) To be or not to be a piRNA: genomic origin and processing of piRNAs. Genome Biol. 15(1):204.
  3. Stuwe E, Fejes Tóth, K., Aravin AA. (2014) Small but sturdy: small RNAs in cellular memory and epigenetics. Genes Dev. 28(5):423-31.
  4. Le Thomas, A., Rogers, AK., Webster, A., Marinov, GK., Liao, SE., Perkins, EM., Hur, JK., Aravin, AA. and Fejes Tóth, K. (2013) Piwi induces piRNA-guided transcriptional silencing and establishment of a repressive chromatin state. Genes Dev. 27(4):390-9
  5. Olovnikov I, Aravin AA, Fejes Tóth, K. (2012) Small RNA in the nucleus: the RNA-chromatin ping-pong. Curr Opin Genet Dev. 22(2):164-71.
  6. ENCODE Project Consortium (2012). Landscape of transcription in human cells. Nature 489(7414):101-8.
  7. ENCODE Project Consortium, (2012) An integrated encyclopedia of DNA elements in the human genome. Nature. 489(7414):57-74.
  8. Fejes Tóth, K. & Hannon, G. (2011). Non-coding RNAs as regulators of transcription and genome organization. In Genome organization and function in the cell nucleus, Rippe, K., ed., pp. 309-351, Wiley-VCH, Weinheim, Print ISBN: 9783527326983.
  9. Caudron-Herger, M., Müller-Ott, K., Mallm, J.P., Marth, C., Schmidt, U., Fejes Tóth, K. and Rippe, K. (2011). Coding RNAs with a non-coding function: maintenance of open chromatin structure. Nucleus. 2(5):410-24ô
  10. ENCODE Project Consortium, Myers RM, Stamatoyannopoulos J, Snyder M, Dunham I, Hardison RC, Bernstein BE, Gingeras TR, Kent WJ, Birney E, Wold B, Crawford GE. (2011). A user’s guide to the encyclopedia of DNA elements (ENCODE). PLoS Biol. Apr;9(4):e1001046.
  11. Fejes Tóth K., Sotirova V., Sachidanandam R., Gordon A., Hannon GJ., Kapranov P., Fossiac S., Willingham AT., Duttagupta R., Dumais E., Gingeras TR (2009). Post-transcriptional processing generates a diversity of 5′-modified long and short RNAs. Nature. 457(7232):1028-32.
  12. Aravin AA., Sachidanandam R., Bourc’his D., Schaefer C., Pezic D., Fejes Tóth K., Bestor T., Hannon GJ. (2008). A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice. Mol Cell. 31(6):785-99.
  13. Aravin AA., Sachidanandam R., Girard A., Fejes Tóth K., Hannon GJ. (2007). Developmentally regulated piRNA clusters implicate MILI in transposon control. Science 316, 744-7.
  14. Görisch, S. M., Wachsmuth, M., Fejes Tóth, K., Lichter, P., and Rippe, K. (2005). Histone acetylation increases chromatin accessibility. J. Cell Sci. 118, 5825-34.
  15. Kepert, J. F., Mazurkiewicz, J., Heuvelman, G., Fejes Tóth, K. & Rippe, K. (2005). NAP1 modulates binding of linker histone H1 to chromatin and induces an extended chromatin fiber conformation. J. Biol. Chem. 280, 34063-72.
  16. Lutzmann, M., Kunze, R., Stangl, K., Stelter, P., Fejes Tóth, K., Boettcher, B. & Hurt, E. (2004). Reconstitution of Nup157 and Nup145N into the Nup84 complex. J. Biol Chem, 280, 15690-15699.
  17. Fejes Tóth, K., Mazurkiewicz, J. & Rippe, K. (2004). Association states of nucleosome assembly protein 1 and its complexes with histones. J. Biol Chem, 280, 15690–15699.
  18. Fejes Tóth, K., Knoch, T. A., Wachsmuth, M., Stöhr, M., Frank-Stöhr, M., Bacher, C. P., Müller, G. & Rippe, K. (2004). Trichostatin A-induced histone acetylation causes decondensation of interphase chromatin. J. Cell Sci. 117, 4277-4287.
  19. Kepert, J. F., Fejes Tóth, K., Caudron, M., Mücke, N., Langowski, J. & Rippe, K. (2003). Conformation of reconstituted mononucleosomes and effect of linker histone H1 binding studied by scanning force microscopy. Biophys. J. 85, 4012-4022.